Lithopsman, if you don't know an answer, don't respond with advice.
Do not cut off the leaves that 'don't look so nice' right now...
Your plant has been through a lot of stress, and if the leaves are still green, then the plant can still photosynthesize from them.
Flytraps seem to exist on the verge of starvation, they live in deficient soil, and have to catch insects for prey... many times, when they are stressed out, they just cant accomplish tihs... the one thing they are never to stressed to do though, is photosynthesize, and you should never take away any little bit of their chance to do that.
I don't clip ugly leaves off even my healthiest plants, untli they are almost completely gone, or I am going to photograph it.
I hope you have not already clipped them, but if you have, then about the only thing I can suggest is that you really really baby it over the next couple of weeks, don't move it, make sure it's conditions are ideal, and let it recover. It probably won't die, it just won't recover as fast as it might have.
you might also want to water it with superthrive, which will help it establish stronger roots, and take up more nutrients from the soil.
Don't repot your plant right now, it's been through a lot lately, and you have it sounds, been doing a great job taking care of those problems... you should let it go into dormancy this winter, and then repot it when you take it out in mid feb.